程式語言
Programming(Python)
| 節 | 週五 |
|---|---|
3 10:10–11:00 | 程式語言 2 節連堂 |
4 11:10–12:00 |
* 根據陽明交大上課時間表所列
This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.)
Some programming background is recommended Please refer to the following website for updated course information: http://tigpbp.iis.sinica.edu.tw/tigpbio/2016Fall.html#P
無備註
1.TA: Chia-Hung Lin(林佳鴻) Email: redlin@iis.sinica.edu.tw 2.There will be assignment for each lecture, and some of the topics will be given projects. Students can expect it to be an intensive course.
Midterm exam (25%). Final exam (30%). Homework (25%). Projects (10%). Class performance (10%).
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| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction to Python 9/16 |
| 第 2 週 | Basic Elements of Python I 09/23 |
| 第 3 週 | Basic Elements of Python II 09/30 |
| 第 4 週 | Basic statements I: branching programs and inputs 10/07 |
| 第 5 週 | Basic statements II: iterative programs 10/14 |
| 第 6 週 | Functions: scope rules and passing arguments 10/21 |
| 第 7 週 | Modules, Files, and Structured Types 10/28 |
| 第 8 週 | Exception handling 11/04 |
| 第 9 週 | Review week 11/11 |
| 第 10 週 | Midterm exam 11/18 |
| 第 11 週 | Introduction to Biopython 11/25 |
| 第 12 週 | Regular expressions 12/02 |
| 第 13 週 | Object-oriented programming: classes 12/09 |
| 第 14 週 | Data analysis toolbox 12/16 |
| 第 15 週 | Data analysis toolbox / Web programming 12/23 |
| 第 16 週 | Web programming 12/30 |
| 第 17 週 | Review week 01/06 |
| 第 18 週 | Final exam 01/13 |
Introduction to Computation and Programming Using Python (revised and expanded edition) by John V. Guttag, 2013, The MIT Press (滄海圖書代理)
- 地點
- by appointment
- 時間
- by appointment
- 聯絡方式
- BP- Dr. Wang, John; johnwang@gate.sinica.edu.tw Dr. Chang, Hui-Yin; s9258029@iis.sinica.edu.tw Dr. Mamie Lih; tsmlih@iis.sinica.edu.tw SHNCC- Dr. Wang, Chih-Yu; ywang@citi.sinica.edu.tw Dr. Wang, Chuan-Ju ; Dr. Shen, Chih-Ya; chihya@citi.sinica.edu.tw