整合性基因體資料庫之應用程式設計

週次計畫

週次	主題
第 1 週	Introduction to Ensembl DB and browser families 2020/09/18
第 2 週	Ensembl browser and Apache web server (1) – docker or VMRevisit of GenBank file format (1) 2020/09/25
第 3 週	Holiday (中秋節調整放假) Ensembl browser and Apache web server (2) – docker or VMRevisit of GenBank file format (2) 2020/10/02
第 4 週	Holiday (國慶日調整放假) Revisit of GenBank file format – file and devicesEnsembl virtual machine 2020/10/09
第 5 週	Revisit of GenBank file format – effective parsing (1)國慶日連假 2020/10/16
第 6 週	Revisit of GenBank file format – effective parsing (2)MySQL and Ensembl Perl APIs 2020/10/23
第 7 週	Numpy and Pandas (1)Ensembl RESTful APIs, R, and Python 2020/10/30
第 8 週	Numpy and Pandas (2) – the iris data as an examplePyEnsembl (1) 2020/11/06
第 9 週	Mid-term exam – docker or VM for a personal web sitePyEnsembl (2) 2020/11/13
第 10 週	TCGA data analysis – SVR, L1, L2, and elasticnet regularizationFinal report and discussion 2020/11/20
第 11 週	Promoter modeling – NMT and self-attention 2020/11/27
第 12 週	Genome annotation DB and MySQL– docker or VM 2020/12/04
第 13 週	ENCODE, Gencode, and gene finding (1) – Rationale 2020/12/11
第 14 週	ENCODE, Gencode, and gene finding (2) – Ensembl API 2020/12/18
第 15 週	Ensembl gene biotypes 2020/12/25
第 16 週	Holiday (元旦) Final exam 2021/01/01
第 17 週	Introduction of next-generation sequencing data analysis (1) 2021/01/08
第 18 週	Introduction of next-generation sequencing data analysis (2) 2021/01/15