程式設計
Programming (Python)
| 節 | 週五 |
|---|---|
3 10:10–11:00 | 程式設計 2 節連堂 |
4 11:10–12:00 |
* 根據陽明交大上課時間表所列
Outline: This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.) Textbook: Python for Biologists: A complete programming course for beginners (Martin Jones) Advanced Python for Biologists (Martin Jones) (Reference) Python for Everybody - Exploring Data In Python 3 (Charles Russell Severance) Note: For Non-BP student to register/sit-in any BP course, it is required to gain course chair's permission and follow the steps: (1) Submit the hard copy or PDF file of the completed TIGP Bioinformatics Course Registration Consent Form to the TIGP BP office (2) Provide the information via the google form at BP Class Enrollment Information. The deadline for above requirement is the 4th week of each semester. Signature of corresponding BP Course Chair should be collected and incomplete form will not be accepted. ※Course grade will NOT be given (even class enrollment is completed at school) if fail to follow the above procedures.
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Midterm exam 25%. Final exam 30%. Homework 35%. Class performance (10%)
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| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction to Python 2021/09/17 |
| 第 2 週 | Basic Elements of Python 2021/09/24 |
| 第 3 週 | Basic statements I: branching programs and inputs 2021/10/01 |
| 第 4 週 | Basic statements II: iterative programs 2021/10/08 |
| 第 5 週 | Functions: scope rules and passing arguments 2021/10/15 |
| 第 6 週 | Modules, Files, and Structured Types 2021/10/22 |
| 第 7 週 | Review Week (no class) 2021/10/29 |
| 第 8 週 | Midterm Exam 2021/11/05 |
| 第 9 週 | Regular expressions 2021/11/12 |
| 第 10 週 | Object-oriented programming: classes 2021/11/19 |
| 第 11 週 | Introduction to Biopython 2021/11/26 |
| 第 12 週 | Data analysis toolbox: NumPy, Pandas, Matplotlib 2021/12/03 |
| 第 13 週 | Machine learning I: scikit-learn 2021/12/10 |
| 第 14 週 | Machine learning II: scikit-learn & keras 2021/12/17 |
| 第 15 週 | Review Week (no class) 2021/12/24 |
| 第 16 週 | 2021/12/31 (Holiday), Moved to 1/7 Holiday (no class) 2021/12/31 |
| 第 17 週 | Final Exam 2022/01/07 |
| 第 18 週 | 2022/01/14 |
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