程式設計
Programming (Python)
| 節 | 週五 |
|---|---|
3 10:10–11:00 | 程式設計 2 節連堂 |
4 11:10–12:00 |
* 根據陽明交大上課時間表所列
This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.)
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TA(BP): Rodrigo Espinoza Silva Email: rodespinosas93@gmail.com Office hours: Tuesdays 14:00~16:00 pm Office location: Room R302-7, Institute of Statistical Sciences, Academia Sinica
Midterm exam 25%. Final exam 30%. Homework 35%. Class performance (10%)
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| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction to Python 2022/9/7(Wed) 10:00-12:00 |
| 第 2 週 | Holiday-Mid-Autumn Festival (no class) 2022/9/9 |
| 第 3 週 | Basic Elements of Python 2022/9/16 |
| 第 4 週 | Basic statements I: branching programs and inputs 2022/9/23 |
| 第 5 週 | Basic statements II: iterative programs 2022/9/30 |
| 第 6 週 | Functions: scope rules and passing arguments 2022/10/7 |
| 第 7 週 | Modules, Files, and Structured Types 2022/10/14 |
| 第 8 週 | Review week (no class) 2022/10/21 |
| 第 9 週 | Midterm Exam 2022/10/28 |
| 第 10 週 | Regular expressions 2022/11/4 |
| 第 11 週 | Object-oriented programming: classes 2022/11/11 |
| 第 12 週 | Introduction to Biopython 2022/11/18 |
| 第 13 週 | Data analysis toolbox: NumPy, Pandas, Matplotlib 2022/11/25 |
| 第 14 週 | Machine learning II: scikit-learn 2022/12/2 |
| 第 15 週 | Machine learning II: scikit-learn & keras 2022/12/9 |
| 第 16 週 | Review Week (no class) 2022/12/16 |
| 第 17 週 | Final Exam 2022/12/23 |
Python for Biologists: A complete programming course for beginners (Martin Jones) Advanced Python for Biologists (Martin Jones) (Reference) Python for Everybody - Exploring Data In Python 3 (Charles Russell Severance)
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