程式設計
Programming (Python)
| 節 | 週五 |
|---|---|
3 10:10–11:00 | 程式設計 2 節連堂 |
4 11:10–12:00 |
* 根據陽明交大上課時間表所列
Outline: This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.)
The course details may change (time, location, topic, etc.), please refer to the class syllabus on the TIGP Bioinformatics Program website before each class: https://idv.sinica.edu.tw/tigpbio/. 【For Non-BP student】 For Non-Bioinformatics Program students to register/sit in any BP course, it is required to gain course chair's permission: (1) Basic Enrollment Information form (https://forms.gle/oK7vJzzrx9EvybbT9) (2) TIGP-BP Course Registration Consent Form ※ Deadline: the 4th week of each semester. ※ Signature of the course chair should be collected before submission. Incomplete form will not be accepted. ※ Course grade will NOT be given (even class enrollment is completed at school) if fail to follow the above procedures.
無備註
TA: (To Be Confirmed) The course details may change (time, location, topic, etc.), please refer to the class syllabus on the TIGP Bioinformatics Program website before each class: https://idv.sinica.edu.tw/tigpbio/.
Grades: Midterm exam 25%. Final exam 30%. Homework 35%. Class performance 10%.
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備註：If you have any question, please contact the TIGP-BIO program assistant, Ms. Jhih-Rou Lai (tigpbio@gate.sinica.edu.tw)
| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction to Python 2024-09-06(五) |
| 第 2 週 | Basic Elements of Python 2024-09-13(五) |
| 第 3 週 | Basic statements I: branching programs and inputs 2024-09-20(五) |
| 第 4 週 | Basic statements II: iterative programs 2024-09-27(五) |
| 第 5 週 | Functions: scope rules and passing arguments 2024-10-04(五) |
| 第 6 週 | Modules, Files, and Structured Types 2024-10-11(五) |
| 第 7 週 | Review Week (no class) 2024-10-18(五) |
| 第 8 週 | Midterm Exam 2024-10-25(五) |
| 第 9 週 | Regular expressions 2024-11-01(五) |
| 第 10 週 | Object-oriented programming: classes 2024-11-08(五) |
| 第 11 週 | Introduction to Biopython 2024-11-15(五) |
| 第 12 週 | Data analysis toolbox: NumPy, Pandas, Matplotlib 2024-11-22(五) |
| 第 13 週 | Machine learning I: scikit-learn 2024-11-29(五) |
| 第 14 週 | Machine learning II: scikit-learn & PyTorch 2024-12-06(五) |
| 第 15 週 | Review Week (no class) 2024-12-13(五) |
| 第 16 週 | Final Exam 2024-12-20(五) |
Textbook: Python for Biologists: A complete programming course for beginners (Martin Jones) Advanced Python for Biologists (Martin Jones) (Reference) Python for Everybody - Exploring Data In Python 3 (Charles Russell Severance)
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